Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_4796KEGG: sse:Ssed_4405 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Swoo_4797
PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: sse:Ssed_4406 MOSC domain containing protein.
       0.723
Swoo_4032
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3702 membrane-flanked domain protein.
  
    0.643
Swoo_4798
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_4411 diguanylate cyclase.
       0.593
Swoo_3098
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: sse:Ssed_1556 phage shock protein C, PspC.
  
    0.550
Swoo_4507
PFAM: protein of unknown function DUF107; KEGG: sse:Ssed_0463 protein of unknown function DUF107.
   
  
 0.470
Swoo_4201
PFAM: PspC domain protein; KEGG: sse:Ssed_0768 phage shock protein C, PspC.
  
    0.414
Swoo_3719
KEGG: sse:Ssed_3496 hypothetical protein.
  
     0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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