STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4801PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_4413 GCN5-related N-acetyltransferase. (182 aa)    
Predicted Functional Partners:
Swoo_4800
PFAM: GCN5-related N-acetyltransferase; KEGG: sbl:Sbal_3354 GCN5-related N-acetyltransferase.
 
     0.814
Swoo_4802
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: slo:Shew_0076 antibiotic biosynthesis monooxygenase.
  
    0.770
Swoo_4440
PFAM: GCN5-related N-acetyltransferase; KEGG: btl:BALH_2694 ribosomal-protein-alanine acetyltransferase.
  
     0.760
Swoo_3398
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3255 GCN5-related N-acetyltransferase.
 
     0.721
Swoo_1894
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2744 GCN5-related N-acetyltransferase.
 
     0.634
Swoo_2374
PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_1931 GCN5-related N-acetyltransferase.
 
     0.546
Swoo_4799
PFAM: PfkB domain protein; KEGG: sse:Ssed_4412 site-specific DNA-methyltransferase (adenine-specific).
       0.535
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.441
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.