Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Swoo_4804Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_06296 transcriptional regulator. (289 aa)    
Predicted Functional Partners:
Swoo_3418
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ctc:CTC00153 transcriptional regulatory protein.
  
     0.744
Swoo_1393
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sus:Acid_2184 transcriptional regulator, LysR family.
  
     0.736
Swoo_0278
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3936 transcriptional regulator, LysR family.
  
     0.729
Swoo_3256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.693
Swoo_1933
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2686 transcriptional regulator, LysR family.
  
     0.690
Swoo_0425
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: she:Shewmr4_0006 transcriptional regulator, LysR family.
  
     0.683
Swoo_1720
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2914 transcriptional regulator, LysR family.
  
     0.681
Swoo_2609
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_1991 transcriptional regulator, LysR family.
  
     0.681
Swoo_0811
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_05499 transcriptional regulator.
  
     0.675
Swoo_2879
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_1675 transcriptional regulator, LysR family.
  
     0.658
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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