Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4806KEGG: sse:Ssed_4414 coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB. (445 aa)    
Predicted Functional Partners:
Swoo_4456
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
  
     0.726
Swoo_4477
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
  
     0.723
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
    0.651
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
 
     0.629
Swoo_3207
PFAM: OmpW family protein; KEGG: spc:Sputcn32_1392 OmpW family protein.
  
  
 0.619
Swoo_4472
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD.
  
     0.603
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.600
Swoo_0884
KEGG: slo:Shew_0759 cytochrome c, putative.
  
     0.596
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.595
Swoo_4451
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0508 polysulphide reductase NrfD.
  
     0.585
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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