Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4814TIGRFAM: formate dehydrogenase region TAT target; KEGG: sse:Ssed_4422 twin-arginine translocation pathway signal. (65 aa)    
Predicted Functional Partners:
Swoo_4813
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_4421 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.676
Swoo_4812
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0060 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
    0.612
Swoo_4816
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_4424 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.575
Swoo_4811
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: spl:Spea_4135 formate dehydrogenase, gamma subunit.
  
    0.574
Swoo_4815
PFAM: cytoplasmic chaperone TorD family protein; KEGG: sse:Ssed_4423 cytoplasmic chaperone TorD family protein.
       0.523
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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