STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4822PFAM: Pirin domain protein; KEGG: cps:CPS_3611 hypothetical protein; Belongs to the pirin family. (227 aa)    
Predicted Functional Partners:
Swoo_4821
KEGG: ilo:IL0309 hypothetical protein.
       0.535
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
 
  
 0.491
Swoo_4823
PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase.
       0.447
Swoo_1702
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sse:Ssed_2943 response regulator receiver modulated serine phosphatase.
   
    0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.