Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4829KEGG: sse:Ssed_4436 hypothetical protein. (515 aa)    
Predicted Functional Partners:
Swoo_4830
PFAM: protein of unknown function DUF833; KEGG: sse:Ssed_4437 protein of unknown function DUF833.
     
 0.817
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.763
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.739
Swoo_1746
PFAM: Dual specificity protein phosphatase; KEGG: sse:Ssed_2901 dual specificity protein phosphatase.
 
     0.733
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.732
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
     0.731
Swoo_2900
KEGG: slo:Shew_2404 hypothetical protein.
  
     0.721
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.719
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.716
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.716
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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