Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hutIKEGG: sse:Ssed_4449 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (408 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 
 0.997
Swoo_0528
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sse:Ssed_4095 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
 
 0.961
hutH
KEGG: slo:Shew_3756 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 0.943
Swoo_4839
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sse:Ssed_4448 transcriptional regulator, histidine utilization repressor, GntR family.
 
  
 0.935
Swoo_3913
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: spl:Spea_3575 phenylalanine/histidine ammonia-lyase.
 
  
 0.909
Swoo_4602
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sse:Ssed_0319 histidine ammonia-lyase.
 
  
 0.890
Swoo_2059
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
  
  
 0.605
Swoo_0915
PFAM: protein of unknown function DUF1704; KEGG: spl:Spea_3220 protein of unknown function DUF1704.
  
  
 0.430
Swoo_3670
PFAM: protein of unknown function DUF1704; KEGG: slo:Shew_2900 protein of unknown function DUF1704.
  
  
 0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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