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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4849PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAa2827 ABC transporter ATP-binding protein. (239 aa)    
Predicted Functional Partners:
Swoo_4848
PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa2828 ABC transporter permease protein.
 
 0.996
Swoo_1903
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2736 ABC transporter permease protein.
 
 0.980
Swoo_4850
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAa2826 substate-binding protein involved in drug resistance; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.916
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
 
 0.869
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
 
 0.811
Swoo_4846
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sde:Sde_3733 response regulator receiver domain protein (CheY-like).
 
     0.810
Swoo_4847
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3732 putative regulator of cell autolysis-like.
       0.773
Swoo_1430
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3196 hypothetical protein.
 
 
 0.768
Swoo_3105
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sse:Ssed_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
    
0.722
Swoo_2023
PFAM: protein of unknown function DUF214; KEGG: mmr:Mmar10_0817 protein of unknown function DUF214.
 
 
 0.715
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.