STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4863PFAM: regulatory protein GntR HTH; KEGG: spl:Spea_4189 transcriptional regulator, GntR family. (125 aa)    
Predicted Functional Partners:
Swoo_4862
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_4188 ABC transporter related.
 
  
 0.831
Swoo_4861
KEGG: spl:Spea_4187 conserved hypothetical protein.
       0.729
Swoo_4866
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_4462 ABC-2 type transporter.
 
     0.683
Swoo_4865
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_4461 ABC transporter-related protein.
 
     0.673
Swoo_4864
TAP domain protein; PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sse:Ssed_4460 TAP domain protein.
 
     0.619
Swoo_1337
PFAM: protein of unknown function DUF179; KEGG: sse:Ssed_1237 protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
   
    0.537
Swoo_4860
PFAM: AMP-dependent synthetase and ligase; KEGG: spl:Spea_4186 AMP-dependent synthetase and ligase.
       0.451
Swoo_4867
Hypothetical protein.
       0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.