Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Swoo_4868KEGG: spl:Spea_4193 conserved hypothetical protein. (78 aa)    
Predicted Functional Partners:
Swoo_4867
Hypothetical protein.
       0.741
Swoo_4866
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_4462 ABC-2 type transporter.
       0.540
Swoo_4864
TAP domain protein; PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: sse:Ssed_4460 TAP domain protein.
       0.535
Swoo_4865
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_4461 ABC transporter-related protein.
       0.535
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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