STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4872PFAM: NLP/P60 protein; KEGG: sse:Ssed_4465 NLP/P60 protein. (183 aa)    
Predicted Functional Partners:
Swoo_4173
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: sse:Ssed_0794 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.532
Swoo_4873
HI0933 family protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_4466 hypothetical protein.
       0.505
Swoo_1947
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sse:Ssed_2675 lytic murein transglycosylase.
     
 0.494
Swoo_4871
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: spl:Spea_4197 molybdenum cofactor synthesis domain.
       0.471
Swoo_1211
PFAM: peptidase M23B; Opacity-associated protein A domain protein; KEGG: sse:Ssed_1103 peptidase M23B.
  
  
 0.461
Swoo_3059
PFAM: peptidase M23B; KEGG: sse:Ssed_1590 peptidase M23B.
  
  
 0.461
Swoo_3483
PFAM: cobalamin synthesis protein P47K; KEGG: sse:Ssed_3334 cobalamin synthesis protein, P47K.
 
      0.452
Swoo_1262
KEGG: sse:Ssed_1167 hypothetical protein.
   
    0.437
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.430
Swoo_1344
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1244 OmpA/MotB domain protein.
 
 
 0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.