Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4872PFAM: NLP/P60 protein; KEGG: sse:Ssed_4465 NLP/P60 protein. (183 aa)    
Predicted Functional Partners:
Swoo_0203
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.811
Swoo_4879
Carboxyl-terminal protease; KEGG: sse:Ssed_4472 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
   
 
 0.759
Swoo_3555
TPR repeat-containing protein; May be involved in cell division.
    
 
 0.746
Swoo_2133
Carboxyl-terminal protease; KEGG: sse:Ssed_2483 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
    
 
 0.722
Swoo_4173
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: sse:Ssed_0794 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.692
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.683
Swoo_4873
HI0933 family protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_4466 hypothetical protein.
       0.505
Swoo_4871
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: spl:Spea_4197 molybdenum cofactor synthesis domain.
       0.471
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
   
 
 0.459
Swoo_3483
PFAM: cobalamin synthesis protein P47K; KEGG: sse:Ssed_3334 cobalamin synthesis protein, P47K.
 
      0.452
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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