Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4879Carboxyl-terminal protease; KEGG: sse:Ssed_4472 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. (401 aa)    
Predicted Functional Partners:
Swoo_4878
PFAM: peptidase M23B; KEGG: sse:Ssed_4471 peptidase M23B.
 
  
 0.886
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.783
Swoo_4872
PFAM: NLP/P60 protein; KEGG: sse:Ssed_4465 NLP/P60 protein.
   
 
 0.759
Swoo_3555
TPR repeat-containing protein; May be involved in cell division.
    
 
 0.751
Swoo_4880
PFAM: protein of unknown function DUF610 YibQ; KEGG: sse:Ssed_4473 protein of unknown function DUF610, YibQ.
       0.713
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: slo:Shew_3803 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
     
 0.543
Swoo_4876
PFAM: Rhodanese domain protein; KEGG: sse:Ssed_4469 rhodanese domain protein.
  
    0.502
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
    0.498
Swoo_4873
HI0933 family protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_4466 hypothetical protein.
     
 0.451
Swoo_3274
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sse:Ssed_3154 putative membrane-associated zinc metalloprotease.
 
  
 0.434
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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