STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4889PFAM: protein of unknown function DUF1063; KEGG: shn:Shewana3_2972 protein of unknown function DUF1063; Belongs to the UPF0597 family. (425 aa)    
Predicted Functional Partners:
Swoo_4888
PFAM: YheO domain protein; KEGG: sbn:Sbal195_3224 YheO domain protein.
 
     0.814
Swoo_4890
KEGG: spl:Spea_0810 serine transporter.
 
  
 0.655
Swoo_0271
KEGG: spl:Spea_3943 conserved hypothetical protein.
  
   
 0.542
Swoo_0107
PFAM: YheO domain protein; KEGG: spl:Spea_4078 YheO domain protein.
 
     0.450
Swoo_0105
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: spl:Spea_4080 diaminopropionate ammonia-lyase.
 
     0.431
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.