Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4906TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sse:Ssed_4494 ParB family protein; Belongs to the ParB family. (296 aa)    
Predicted Functional Partners:
Swoo_4907
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sse:Ssed_4495 cobyrinic acid a,c-diamide synthase.
 
 
 0.985
Swoo_1641
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sse:Ssed_3043 cobyrinic acid a,c-diamide synthase.
 
 
 0.944
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.897
Swoo_2483
PFAM: cell divisionFtsK/SpoIIIE; KEGG: sse:Ssed_2127 cell division protein FtsK/SpoIIIE.
  
   
 0.808
Swoo_1535
KEGG: sse:Ssed_1422 hypothetical protein.
  
 
 0.725
Swoo_1769
KEGG: sse:Ssed_2879 hypothetical protein.
  
 
 0.725
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.674
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.652
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
  
 0.647
Swoo_4905
PFAM: ATP synthase I chain; KEGG: sse:Ssed_4493 ATP synthase I chain.
       0.584
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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