Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKC94839.1Protein of unknown function. (446 aa)    
Predicted Functional Partners:
SKD09792.1
F5/8 type C domain-containing protein.
  
     0.707
SKD01695.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.668
SKD08134.1
SusD family protein.
  
     0.652
SKD10013.1
Starch-binding associating with outer membrane.
  
     0.640
SKD10004.1
Starch-binding associating with outer membrane.
  
     0.616
SKD09570.1
Calcineurin-like phosphoesterase.
  
     0.607
SKC96702.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.476
SKC98107.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
     0.467
SKD09800.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
     0.466
SKD10003.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.454
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.