Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKC94858.1BON domain-containing protein. (165 aa)    
Predicted Functional Partners:
SKC94860.1
SH3 domain-containing protein.
 
   
 0.934
SKD08741.1
Protein of unknown function.
  
    0.780
SKD05768.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
    0.739
SKD08145.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.597
SKD08713.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
  
 0.548
SKC99669.1
L-proline dehydrogenase.
     
  0.524
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
     
  0.524
SKC94856.1
Protein of unknown function.
       0.509
SKD04823.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.506
SKD00419.1
Hypothetical protein.
  
     0.491
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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