STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC94955.1Glycosyl hydrolases family 38 N-terminal domain-containing protein. (880 aa)    
Predicted Functional Partners:
SKD09928.1
Hypothetical protein.
  
     0.764
SKD09927.1
Starch-binding associating with outer membrane.
  
     0.718
SKD09926.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.707
SKD09934.1
Hypothetical protein.
  
     0.666
SKD04165.1
Hypothetical protein.
  
     0.644
SKC95174.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.639
SKC96359.1
Starch-binding associating with outer membrane.
  
     0.638
SKD10292.1
Mannose-6-phosphate isomerase, class I.
 
  
 0.630
SKD10296.1
Hypothetical protein.
 
     0.619
SKD09355.1
Hypothetical protein.
 
     0.601
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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