STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95011.1Hypothetical protein. (655 aa)    
Predicted Functional Partners:
SKC98846.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
     
 0.818
SKC99702.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
     
 0.818
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.759
SKD03143.1
Cys/Met metabolism PLP-dependent enzyme.
     
 0.733
SKC95496.1
Cystathionine beta-lyase.
     
 0.645
SKD00184.1
Cystathionine beta-lyase.
     
 0.645
SKC94749.1
Cystathionine beta-synthase.
    
 0.620
SKC95013.1
Helix-turn-helix domain-containing protein.
       0.613
SKD08703.1
Peptidase family M1.
  
  
  0.564
SKC99805.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
 
 0.464
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.