Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKC95023.1Surface polysaccharide O-acyltransferase, integral membrane enzyme. (405 aa)    
Predicted Functional Partners:
SKC95026.1
Histidine kinase.
 
     0.823
SKC95027.1
Two component transcriptional regulator, LytTR family.
       0.746
SKC99996.1
Dihydrodipicolinate reductase; Belongs to the DapB family.
    
  0.732
SKD09252.1
Hypothetical protein.
  
     0.582
SKC95022.1
alpha-L-fucosidase.
       0.547
SKD09000.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.488
SKD09923.1
Hypothetical protein.
  
     0.460
SKC94837.1
Hypothetical protein.
  
     0.456
SKD10341.1
SnoaL-like domain-containing protein.
  
     0.409
serC
Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
  0.403
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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