SKC95026.1 protein (Chitinophaga ginsengisegetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SKC95026.1

Histidine kinase. (341 aa)

Predicted Functional Partners:

SKC95027.1

0.962

SKD09002.1

0.833

SKC98435.1

0.832

SKD06014.1

0.832

SKD08922.1

0.832

SKC95003.1

0.831

SKC95796.1

0.831

SKD10155.1

0.830

SKC95925.1

0.827

SKD04925.1

0.827

Your Current Organism:

Chitinophaga ginsengisegetis

NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC95003.1	SKC95026.1	SAMN05660461_0189	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.831
SKC95026.1	SKC95003.1	SAMN05660461_0200	SAMN05660461_0189	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.831
SKC95026.1	SKC95027.1	SAMN05660461_0200	SAMN05660461_0201	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.962
SKC95026.1	SKC95796.1	SAMN05660461_0200	SAMN05660461_0520	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.831
SKC95026.1	SKC95925.1	SAMN05660461_0200	SAMN05660461_0561	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.827
SKC95026.1	SKC98435.1	SAMN05660461_0200	SAMN05660461_1192	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.832
SKC95026.1	SKD04925.1	SAMN05660461_0200	SAMN05660461_2969	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.827
SKC95026.1	SKD06014.1	SAMN05660461_0200	SAMN05660461_3271	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.832
SKC95026.1	SKD08922.1	SAMN05660461_0200	SAMN05660461_4799	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.832
SKC95026.1	SKD09002.1	SAMN05660461_0200	SAMN05660461_4879	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.833
SKC95026.1	SKD10155.1	SAMN05660461_0200	SAMN05660461_6059	Histidine kinase.	Two component transcriptional regulator, LytTR family.	0.830
SKC95027.1	SKC95026.1	SAMN05660461_0201	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.962
SKC95796.1	SKC95026.1	SAMN05660461_0520	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.831
SKC95925.1	SKC95026.1	SAMN05660461_0561	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.827
SKC98435.1	SKC95026.1	SAMN05660461_1192	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.832
SKD04925.1	SKC95026.1	SAMN05660461_2969	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.827
SKD06014.1	SKC95026.1	SAMN05660461_3271	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.832
SKD08922.1	SKC95026.1	SAMN05660461_4799	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.832
SKD09002.1	SKC95026.1	SAMN05660461_4879	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.833
SKD10155.1	SKC95026.1	SAMN05660461_6059	SAMN05660461_0200	Two component transcriptional regulator, LytTR family.	Histidine kinase.	0.830