STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95026.1Histidine kinase. (341 aa)    
Predicted Functional Partners:
SKC95027.1
Two component transcriptional regulator, LytTR family.
 
  0.965
SKC98435.1
Two component transcriptional regulator, LytTR family.
  
  0.839
SKD06014.1
Two component transcriptional regulator, LytTR family.
  
  0.839
SKD08922.1
Two component transcriptional regulator, LytTR family.
  
  0.839
SKD09002.1
Two component transcriptional regulator, LytTR family.
  
  0.839
SKC95796.1
Two component transcriptional regulator, LytTR family.
  
  0.838
SKC95003.1
Two component transcriptional regulator, LytTR family.
  
  0.837
SKD10155.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SKC95925.1
Two component transcriptional regulator, LytTR family.
  
  0.834
SKD04925.1
Two component transcriptional regulator, LytTR family.
  
  0.834
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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