STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95300.1DoxX-like family protein. (134 aa)    
Predicted Functional Partners:
SKC95292.1
Cytochrome P460.
  
  
  0.729
SKD09657.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.596
SKD08589.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
   
 
  0.575
SKC99786.1
Alpha-galactosidase.
  
     0.574
SKD07654.1
Hypothetical protein.
 
     0.536
SKC94821.1
Cytochrome P460.
  
  
  0.515
SKC95302.1
Hypothetical protein.
       0.504
SKD09596.1
Putative hydrolase of the HAD superfamily.
  
     0.493
SKD07658.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.471
SKD09377.1
DoxX-like family protein.
  
     0.469
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.