STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95626.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SKD02663.1
Methyltransferase domain-containing protein.
  
     0.552
SKD00605.1
Hypothetical protein.
  
     0.530
SKD08897.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.527
SKC99146.1
Methyltransferase domain-containing protein.
  
     0.525
SKD03042.1
Hypothetical protein.
  
     0.518
SKD00610.1
Uncharacterized conserved protein (COG2071).
  
     0.492
SKD04225.1
Peptidase family M48.
  
     0.491
SKD02185.1
1-phosphatidylinositol phosphodiesterase.
  
     0.474
SKD09153.1
Hypothetical protein.
  
     0.454
SKC97303.1
Exosortase N.
  
     0.438
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.