STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95636.1SusD family protein. (484 aa)    
Predicted Functional Partners:
SKC95634.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.932
SKC98241.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.828
SKC95688.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.827
SKC96348.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.827
SKC95955.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.816
SKC97745.1
TonB-linked outer membrane protein, SusC/RagA family; Manually curated.
  
 
   0.802
SKC95860.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.777
SKC97798.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.773
SKD06747.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.773
SKC95652.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.767
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.