Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKC95652.1TonB-linked outer membrane protein, SusC/RagA family. (1214 aa)    
Predicted Functional Partners:
SKC95649.1
SusD family protein; Manually curated.
 
 
   0.939
SKC95857.1
SusD family protein.
 
 
   0.804
SKC95686.1
SusD family protein.
 
 
   0.803
SKD02016.1
SusD family protein.
  
 
   0.799
SKD09296.1
SusD family protein.
  
 
   0.795
SKC95953.1
SusD family protein.
  
 
   0.794
SKD00648.1
SusD family protein.
  
 
   0.784
SKD09748.1
SusD family protein.
  
 
   0.783
SKD06743.1
SusD family protein.
  
 
   0.775
SKC96345.1
SusD family protein.
  
 
   0.763
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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