STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC95775.1Starch-binding associating with outer membrane. (625 aa)    
Predicted Functional Partners:
SKC95778.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.957
SKC95772.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.937
SKC95745.1
Glycosyl hydrolase family 10.
 
  
  0.888
SKC95766.1
Protein of unknown function.
 
     0.876
SKC95769.1
Starch-binding associating with outer membrane.
 
    
0.724
SKD06849.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.717
SKD09534.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
   
  0.630
SKD01946.1
Iron complex outermembrane recepter protein.
  
 
   0.610
SKD10311.1
Iron complex outermembrane recepter protein.
  
 
   0.606
SKC97143.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.604
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.