Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKC95889.1Protein of unknown function. (205 aa)    
Predicted Functional Partners:
SKD09670.1
Protein of unknown function.
  
     0.747
SKC95898.1
Uncharacterized membrane protein YoaK, UPF0700 family.
       0.712
SKC95892.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
       0.705
SKC95895.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
       0.705
SKC95905.1
Hypothetical protein.
       0.586
SKC95901.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
       0.583
SKC95903.1
Putative oxidoreductase.
       0.583
SKC95906.1
Cytosol aminopeptidase family, N-terminal domain.
       0.571
SKC95917.1
Alginate export.
       0.530
SKC95919.1
Nicotinamidase-related amidase.
       0.419
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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