STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC96675.1Osmoprotectant transport system permease protein. (522 aa)    
Predicted Functional Partners:
SKC96671.1
Osmoprotectant transport system ATP-binding protein.
 0.999
SKD07956.1
CBS domain-containing protein.
    
  0.859
SKC94749.1
Cystathionine beta-synthase.
    
  0.851
SKC96680.1
Ergothioneine biosynthesis protein EgtB.
 
     0.851
SKC96667.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
 
   
 0.827
SKD04764.1
H+/Cl-antiporter ClcA.
    
 0.745
SKD08607.1
H+/Cl-antiporter ClcA.
    
 0.745
SKC96686.1
Dimethylhistidine N-methyltransferase.
 
     0.741
SKD09565.1
Conserved hypothetical protein.
 
    0.678
SKD08713.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
  
 0.652
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.