Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKC96949.1ABC-2 type transport system ATP-binding protein. (254 aa)    
Predicted Functional Partners:
SKD08979.1
ABC-2 type transport system permease protein.
 
 0.952
SKD08980.1
ABC-2 type transport system permease protein.
 
 0.900
SKC98688.1
ABC-2 type transport system permease protein.
 
 
 0.854
SKD08959.1
ABC-2 type transport system permease protein.
 
 
 0.848
SKC96946.1
DinB superfamily protein.
       0.765
SKD00626.1
Signal transduction histidine kinase.
    
 0.765
SKC96943.1
NUDIX domain-containing protein.
       0.750
SKD08185.1
Putative ABC transport system ATP-binding protein.
  
  
  0.680
SKC96952.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
   
 0.602
SKC97736.1
ABC-2 type transport system permease protein.
 
 
 0.547
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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