STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC97246.13-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (238 aa)    
Predicted Functional Partners:
SKC95278.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.920
fabH
3-oxoacyl-[acyl-carrier-protein] synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
   
 
 0.786
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
     
 0.778
SKD10361.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.764
SKD10533.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein; Partial gene; manually curated.
  
 
 0.764
SKD10537.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.764
SKD08274.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.758
SKD09902.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
   
 
 0.688
SKC96598.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.674
SKD10362.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.633
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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