STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC97355.1TonB-linked outer membrane protein, SusC/RagA family; Manually curated. (1061 aa)    
Predicted Functional Partners:
SKC97352.1
SusD family protein.
 
 
   0.951
SKC98871.1
SusD family protein.
  
 
   0.827
SKC99369.1
Starch-binding associating with outer membrane.
  
 
   0.814
SKC95127.1
Starch-binding associating with outer membrane.
 
 
   0.813
SKC99379.1
Starch-binding associating with outer membrane.
  
 
   0.804
SKD09748.1
SusD family protein.
  
 
   0.800
SKD09622.1
Starch-binding associating with outer membrane.
  
 
   0.790
SKC95686.1
SusD family protein.
  
 
   0.779
SKD09110.1
Starch-binding associating with outer membrane.
  
 
   0.764
SKC95636.1
SusD family protein.
  
 
   0.757
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.