Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKC97794.1SusD family protein. (482 aa)    
Predicted Functional Partners:
SKC97798.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.933
SKC95688.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.786
SKC96348.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.786
SKC98241.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.786
SKC95634.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.774
SKD06747.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.773
SKC95860.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.766
SKC95955.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.765
SKC95652.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.760
SKD00651.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.759
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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