Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKC97855.1Hypothetical protein. (277 aa)    
Predicted Functional Partners:
SKC97853.1
Universal stress protein family protein.
 
    
0.756
SKC97851.1
Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain).
 
     0.749
SKC97849.1
Murein L,D-transpeptidase YcbB/YkuD.
 
     0.734
SKC95236.1
Gliding motility-associated C-terminal domain-containing protein.
  
    0.729
SKD00419.1
Hypothetical protein.
  
     0.708
SKC95238.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.681
SKD01642.1
Hypothetical protein.
  
     0.656
SKD05837.1
Hypothetical protein.
  
     0.644
SKD03135.1
Hypothetical protein.
  
     0.639
SKD06694.1
Hypothetical protein.
  
     0.624
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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