STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKC98631.1Predicted arabinose efflux permease, MFS family. (402 aa)    
Predicted Functional Partners:
SKC98638.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.804
SKC98635.1
Phenazine biosynthesis protein PhzF family.
       0.773
SKC98628.1
Transcriptional regulator, TetR family.
       0.568
SKD04798.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.449
SKD08268.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
  
  
  0.439
SKD08589.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
     
 0.418
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.