Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SKC99205.1ATP-binding cassette, subfamily B. (765 aa)    
Predicted Functional Partners:
SKC99201.1
Hypothetical protein.
 
 0.981
SKD09467.1
Multidrug resistance efflux pump.
 
 0.930
SKD06952.1
Siderophore-interacting FAD-binding domain-containing protein.
   
  0.841
SKC99198.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
   
 0.838
SKD09830.1
Lanthionine synthetase C-like protein.
 
   
 0.738
SKD08027.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.685
SKD08720.1
Membrane fusion protein, multidrug efflux system.
  
 0.685
SKD08820.1
HlyD family secretion protein.
  
 0.685
SKD08933.1
Membrane fusion protein, multidrug efflux system.
  
 0.685
SKD08976.1
HlyD family secretion protein.
  
 0.685
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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