Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SKC99410.1UbiA prenyltransferase family protein. (277 aa)    
Predicted Functional Partners:
SKC94853.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
  
     0.658
SKC99432.1
Putative aminopeptidase FrvX.
       0.637
SKC99406.1
propionyl-CoA carboxylase beta chain.
       0.603
SKD00473.1
Hypothetical protein.
  
     0.603
SKD06887.1
Hypothetical protein.
  
     0.596
SKC97902.1
Hypothetical protein.
  
     0.594
SKD08948.1
Hypothetical protein.
  
     0.579
SKC94915.1
Hypothetical protein.
  
     0.571
SKD00419.1
Hypothetical protein.
  
     0.567
SKC97926.1
Hypothetical protein.
  
     0.546
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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