STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC99568.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
SKC99534.1
Hypothetical protein.
 
 
 0.981
SKC99539.1
Type VI secretion, VasB, ImpH, VC_A0111.
 
 
 0.960
SKC99570.1
ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family.
 
 
 0.951
SKC99557.1
Hypothetical protein.
 
  
 0.926
SKC99565.1
Hypothetical protein.
 
     0.926
SKD02734.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
  
 0.915
SKD05465.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
  
 0.915
SKD06809.1
Rhs element Vgr protein.
 
  
 0.915
SKC99547.1
Phage baseplate assembly protein W.
 
   
 0.814
SKC99526.1
Hypothetical protein.
 
     0.798
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.