STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00387.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
SKD00385.1
Helix-turn-helix domain-containing protein.
       0.798
SKD00389.1
Copper chaperone CopZ.
       0.781
SKD03135.1
Hypothetical protein.
  
     0.703
SKD08564.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.697
SKD00393.1
Hypothetical protein.
 
     0.692
SKD05342.1
Hypothetical protein.
  
     0.635
SKC95544.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.631
SKD09051.1
AsmA protein.
  
     0.631
SKC95322.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.588
SKD05337.1
Predicted membrane protein.
  
     0.581
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.