Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD00703.1Histidine kinase. (396 aa)    
Predicted Functional Partners:
SKD00706.1
Two component transcriptional regulator, LytTR family.
 
  0.961
SKC95027.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SKC98435.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SKD06014.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SKD09470.1
Two component transcriptional regulator, LytTR family.
 
  0.836
SKD10155.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SKC95003.1
Two component transcriptional regulator, LytTR family.
  
  0.835
SKC95796.1
Two component transcriptional regulator, LytTR family.
  
  0.835
SKC96274.1
Two component transcriptional regulator, LytTR family.
  
  0.835
SKD09002.1
Two component transcriptional regulator, LytTR family.
  
  0.835
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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