STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00722.1Xylan 1,4-beta-xylosidase. (530 aa)    
Predicted Functional Partners:
SKD09259.1
Xylan 1,4-beta-xylosidase.
  
  
 
0.892
SKD00580.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
     
 0.840
SKD00725.1
Enterochelin esterase.
 
  
  0.826
SKD00718.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.824
SKC95737.1
Endo-1,4-beta-xylanase.
  
  
 0.729
SKC95784.1
Beta-xylosidase.
  
  
 0.718
SKD02133.1
O-Glycosyl hydrolase.
  
  
  0.701
SKD00726.1
Beta-galactosidase.
     
 0.681
SKD06752.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     
 0.676
SKD09938.1
Alpha galactosidase A.
  
     0.663
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.