STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00811.1Cyclically-permuted mutarotase family protein. (381 aa)    
Predicted Functional Partners:
SKD00808.1
Sugar phosphate permease.
 
    0.947
SKD00816.1
N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.936
SKD00819.1
Starch-binding associating with outer membrane.
 
     0.923
SKD00822.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.910
SKD00805.1
Sialidase-1.
 
     0.892
SKD00824.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.860
SKD09219.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      0.845
SKD00247.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
  0.815
SKC99035.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.764
SKD10094.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.758
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.