Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD00857.1FecR family protein. (375 aa)    
Predicted Functional Partners:
SKC95973.1
FecR family protein.
  
     0.741
SKD09856.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.710
SKD00860.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.685
SKD04890.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.670
SKD09978.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.664
SKD07091.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.663
SKD09476.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.659
SKC99909.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.544
SKD09575.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.512
SKD00855.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.490
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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