Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SKD00862.1L-rhamnose-H+ transport protein. (318 aa)    
Predicted Functional Partners:
SKD08863.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.705
SKD00891.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.672
SKD09385.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.627
SKD08865.1
Sugar (pentulose or hexulose) kinase.
 
  
 0.619
SKD08869.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
     0.584
SKD00865.1
Glycosyltransferase WbsX.
  
   0.573
SKD09074.1
Hypothetical protein.
  
 
   0.502
SKD08991.1
alpha-L-rhamnosidase.
 
 
   0.474
SKD01087.1
MFS transporter, ACS family, hexuronate transporter.
  
    0.453
SKD04655.1
alpha-L-rhamnosidase.
 
 
   0.442
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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