STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00862.1L-rhamnose-H+ transport protein. (318 aa)    
Predicted Functional Partners:
SKD08863.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.705
SKD00891.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.673
SKD09385.1
Glycosyl hydrolases family 2, sugar binding domain.
 
     0.627
SKD08865.1
Sugar (pentulose or hexulose) kinase.
 
  
 0.615
SKD08869.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
     0.574
SKD00865.1
Glycosyltransferase WbsX.
       0.550
SKD09074.1
Hypothetical protein.
 
     0.493
SKD01087.1
MFS transporter, ACS family, hexuronate transporter.
  
    0.453
SKD08991.1
alpha-L-rhamnosidase.
 
     0.448
SKD02037.1
Protein of unknown function.
  
     0.436
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.