STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00873.1Protein of unknown function, DUF608. (783 aa)    
Predicted Functional Partners:
SKC97874.1
Phosphorylase / glycogen(starch) synthase.
  
 0.972
SKD00869.1
Trehalose and maltose hydrolase (possible phosphorylase).
  
 
  0.833
SKD00878.1
Starch-binding associating with outer membrane.
       0.661
SKD08713.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 
 0.661
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.651
SKD00882.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.586
glk
Glucokinase; Belongs to the bacterial glucokinase family.
    
  0.478
SKC94633.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  0.434
SKD09037.1
Quinol monooxygenase YgiN.
  
     0.434
SKC94639.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.408
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.