STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00891.1Glycosyl hydrolases family 2, sugar binding domain. (1117 aa)    
Predicted Functional Partners:
SKD09534.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
  
 0.783
SKC94865.1
Glycosyl hydrolase catalytic core.
 
  
 0.693
SKD00862.1
L-rhamnose-H+ transport protein.
 
     0.673
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.662
SKD09801.1
GDSL-like Lipase/Acylhydrolase.
  
  0.650
SKD09880.1
Hypothetical protein.
  
 0.647
SKD00894.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.638
SKC99473.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.619
SKD08868.1
L-rhamnose-H+ transport protein.
 
     0.606
SKD09386.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.586
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.