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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD00921.1TonB-linked outer membrane protein, SusC/RagA family. (1172 aa)    
Predicted Functional Partners:
SKD00924.1
SusD family protein.
 
     0.930
SKD01453.1
SusD family protein.
  
     0.768
SKD06290.1
Starch-binding associating with outer membrane.
  
     0.766
SKD07656.1
Starch-binding associating with outer membrane.
  
     0.764
SKD00928.1
Thiol-disulfide isomerase or thioredoxin.
 
     0.759
SKC97825.1
Hypothetical protein.
  
     0.758
SKD04299.1
TonB-dependent receptor.
  
  
 0.744
SKD01029.1
Protein of unknown function.
  
 
   0.743
SKD00842.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.714
SKD09336.1
SusD family protein.
  
     0.714
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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