STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKD00924.1SusD family protein. (487 aa)    
Predicted Functional Partners:
SKD00921.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.930
SKD06293.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.814
SKD06290.1
Starch-binding associating with outer membrane.
  
 
   0.808
SKD00928.1
Thiol-disulfide isomerase or thioredoxin.
 
     0.805
SKD08899.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.793
SKC97825.1
Hypothetical protein.
  
     0.757
SKD01029.1
Protein of unknown function.
  
 
   0.756
SKD01450.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.747
SKD09747.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.734
SKD04279.1
Fasciclin domain-containing protein.
  
     0.732
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.