Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SKD00928.1Thiol-disulfide isomerase or thioredoxin. (376 aa)    
Predicted Functional Partners:
SKD00924.1
SusD family protein.
 
     0.805
SKD00921.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.759
SKD09912.1
AhpC/TSA family protein.
  
     0.723
SKC97825.1
Hypothetical protein.
  
     0.719
SKD09763.1
Uncharacterized conserved protein YegJ, DUF2314 family.
  
 
  0.637
SKC99269.1
Protein of unknown function.
  
     0.608
SKD09771.1
ABC-2 type transport system permease protein.
  
     0.583
SKD09747.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.570
SKD04299.1
TonB-dependent receptor.
  
     0.545
SKC96860.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 0.540
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.