Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SKD00934.1Por secretion system C-terminal sorting domain-containing protein. (1819 aa)    
Predicted Functional Partners:
SKC94546.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.812
SKD09925.1
Hypothetical protein.
  
  
  0.812
SKC94679.1
Right handed beta helix region.
  
  
  0.808
SKC99049.1
Hypothetical protein.
  
  
  0.803
SKC99957.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.795
SKD08626.1
Hypothetical protein; Partial gene; manually curated.
  
  
  0.781
SKC95258.1
Uncharacterized conserved protein YbaP, TraB family.
  
     0.772
SKD07646.1
Peptidase family M23.
  
     0.772
SKD07038.1
Hypothetical protein.
  
     0.770
SKD04474.1
GxGYxY sequence motif-containing protein.
  
     0.768
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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