Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SKD00936.1Peroxiredoxin. (400 aa)    
Predicted Functional Partners:
SKD06559.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
     
  0.784
SKC95843.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.721
SKD00938.1
PKD-like family protein.
       0.636
SKD00941.1
Protein of unknown function.
       0.593
SKD00944.1
SusD family protein.
       0.577
SKD00947.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.573
SKC97791.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.548
SKD06855.1
2-oxoisovalerate dehydrogenase E1 component.
     
  0.479
SKD08203.1
2-oxoisovalerate dehydrogenase E1 component.
     
  0.479
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.429
Your Current Organism:
Chitinophaga ginsengisegetis
NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040
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